NCKUEE Faculty Data
Chinese Version
Professor Tien-Hao (Darby) Chang
Address
EE Building 6F R92601
Email
TEL
+886-6-2757575 ext.62421
Lab Weblink
Background
Educations
2004-2006
Ph.D., CSIE, National Taiwan University Taiwan
2002-2004
M.S., CSIE, National Taiwan University Taiwan
1998-2002
B.S., CSIE, National Taiwan University Taiwan
Experiences
2020~now
Digital & Technology Division, Head of Division
2015~now
Professor, Dept. of Electrical Engineering, National Cheng-Kung University
2010~2015
Associate Professor, Dept. of Electrical Engineering, National Cheng-Kung University
2006-2010
Assistant Professor, Dept. of Electrical Engineering, National Cheng-Kung University
Specialities
  • Machine Learning
  • Data Mining
  • Gene Regulation
  • Systems Biology
  • Social Web Design and App Programming (Mobile Programming)
Publication
Journal
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  1. Wu, J., Liu, Y. & Chang, D.T. SigUNet: signal peptide recognition based on semantic segmentation. BMC Bioinformatics 20, 677 (2019). (https://doi.org/10.1186/s12859-019-3245-z)
  2. Che-Wei Chang, Chai-Wei Chou, Darby Tien-Hao Chang*, "CCProf: exploring conformational change profile of proteins," Database, 2016. ( http://database.oxfordjournals.org/content/2016/baw029.full)
  3. Che-Wei Chang, Wen-Bin Lee, An Chen-Deng, Tsunglin Liu, Joseph T. Tseng, Darby Tien-Hao Chang*, "Light-RCV: a lightweight read coverage viewer for next generation sequencing data", BMC Bioinformatics(Suppl 18), 2015 (http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-16-S18-S11)
  4. Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh, Darby Tien-Hao Chang*, " A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae”, BMC Systems Biology (Suppl 5), 2014(http://www.biomedcentral.com/1752-0509/8/S5/S9)
  5. Hao Wang, Wen-Hao Chiang, Chia-Wei Chou, Darby Tien-Hao Chang*, “Integrating Phosphorylation and Catalytic Sites Information into AH-DB”, The SIJ Transactions on Computer Science Engineering & its Applications, 2014(http://www.thesij.com/CSEA-2014-May.php)
  6. Tzu-Wen Lin, Jian-Wei Wu, Darby Tien-Hao Chang*, "Combining Phylogenetic Profiling-Based and Machine Learning-Based Techniques to Predict Functional Related Proteins", PLOS ONE, 2013(http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0075940)
  7. Chen-Yu Fan, Yi-Han Bai, Cheng-Yi Huang, Tsung-Ju Yao, Darby Tien-Hao Chang*, "PRASA: an integrated web server that analyzes protein interaction types", Gene, 2013(http://www.sciencedirect.com/science/article/pii/S0378111912015569)
  8. Darby Tien-Hao Chang, Wen-Si Li, Yi-Han Bai, Wei-Sheng Wu*, "YGA: identifying distinct biological features between yeast gene sets", Gene, 2013(http://www.sciencedirect.com/science/article/pii/S0378111912015740)
  9. Jung-Hsien Chiang*, Darby Tien-Hao Chang, Hung-Yu Kao, "Introduction to the 23rd International Conference on Genome Informatics (GIW2012)", Gene, 2013(http://www.sciencedirect.com/science/article/pii/S0378111913000243)
  10. Darby Tien-Hao Chang, Chao-Hsuan Ke, Jung-Hsin Lin, Jung-Hsien Chiang*, "AutoBind: Automatic extraction of protein-ligand binding affinity data from biological literature", Bioinformatics(p2162~2168), 2012(http://bioinformatics.oxfordjournals.org/content/28/16/2162.long)
  11. Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Chien-Yu Chen, Darby Tien-Hao Chang*, "DBD2BS: connecting a DNA-binding protein with its binding sites", Nucleic Acids Research(W173~W179), 2012(http://nar.oxfordjournals.org/content/40/W1/W173.long)
  12. Darby Tien-Hao Chang, Cheng-Yi Huang, Chi-Yeh Wu and Wei-Sheng Wu*, “YPA: an integrated repository of promoter features in Saccharomyces cerevisiae,” Nucleic Acids Research, 39(suppl 1), D647-D652, 2011. (SCI 8.278, 27/290=9.3% in BIOCHEMISTRY & MOLECULAR BIOLOGY) (NSC 99-2628-E-006-017-) YPA is available at http://ypa.ee.ncku.edu.tw/ and http://ypa.csbb.ntu.edu.tw/.
  13. Darby Tien-Hao Chang, Jung-Hsin Lin, Chih-Hung Hsieh and Yen-Jen Oyang*, “On the design of optimization algorithms for prediction of molecular interactions,” International Journal on Artificial Intelligence Tools, 19, 3, 267-280, 2010. (SCI 0.25, 109/115=94.8% in COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE) (NSC 97-2627-P-001-002-, 98-2627-B-002-011- and 98-2221-E-006-180-)
  14. Chi-Yuan Yu, Lih-Ching Chou and Darby Tien-Hao Chang*, “Predicting protein-protein interactions in unbalanced data using the primary structure of proteins,” BMC Bioinformatics, 11:167, 2010. (SCI 3.024, 6/47=12.8% in MATHEMATICAL & COMPUTATIONAL BIOLOGY) (NSC 98-2627-B-002-011 and 98-2221-E-006-180)
  15. Chih-Hung Hsieh, Darby Tien-Hao Chang*, Cheng-Hao, Hsueh, Chi-Yeh Wu and Yen-Jen Oyang, “Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm,” BMC Bioinformatics, 11(Suppl 1):S52, 2010. (SCI 3.024, 6/47=12.8% in MATHEMATICAL & COMPUTATIONAL BIOLOGY) (NSC 97-2627-P-001-002, 96-2320-B-006-027-MY2 and 96-2221-E-006-232-MY2)
  16. Darby Tien-Hao Chang*, Yu-Tang Syu and Po-Chang Lin, “Predicting the protein-protein interactions using primary structures with predicted protein surface,” BMC Bioinformatics, 11(Suppl 1):S3, 2010. (SCI 3.024, 6/47=12.8% in MATHEMATICAL & COMPUTATIONAL BIOLOGY) (NSC 97-2627-P-001-002, 96-2320-B-006-027-MY2 and 96-2221-E-006-232-MY2)
  17. Darby Tien-Hao Chang, Ting-Ying Chien and Chien-Yu Chen*, “seeMotif: exploring and visualizing sequence motifs in 3D structures,” Nucleic Acids Research, 37, Web Server Issue, W552-W558, 2009. (SCI 8.278, 27/290=9.3% in BIOCHEMISTRY & MOLECULAR BIOLOGY) (NSC 96-2320-B-006-027-MY2, NSC 96-2221-E-006-232-MY2, 97-2627-P-001-002 and 97-2221-E-002-184) seeMotif is available at http://seemotif.csie.ntu.edu.tw,
  18. Darby Tien-Hao Chang*, Hsuan-Yu Huang, Yu-Tang Syu and Chih-Peng Wu, “Real value prediction of protein solvent accessibility using enhanced PSSM features,” BMC Bioinformatics, 9(Suppl 12):S12, 2008. (SCI 3.024, 6/47=12.8% in MATHEMATICAL & COMPUTATIONAL BIOLOGY) (NSC 97-2627-P-001-002, 96-2320-B-006-027-MY2 and 96-2221-E-006-232-MY2)
  19. Darby Tien-Hao Chang*, Chih-Ching Wang and Jian-Wei Chen, “Using a kernel density estimation based classifier to predict species-specific microRNA precursors,” BMC Bioinformatics, 9(Suppl 12):S2, 2008. (SCI 3.024, 6/47=12.8% in MATHEMATICAL & COMPUTATIONAL BIOLOGY) (NSC 97-2627-P-001-002, 96-2320-B-006-027-MY2 and 96-2221-E-006-232-MY2)
  20. Ting-Ying Chien, Darby Tien-Hao Chang*, Chien-Yu Chen, Yi-Zhong Weng and Chen-Ming Hsu, “E1DS: catalytic site prediction based on 1D signatures of concurrent conservation,” Nucleic Acids Research, 36, Web Server Issue, W291-W296, 2008. (SCI 8.278, 27/290=9.3% in BIOCHEMISTRY & MOLECULAR BIOLOGY) (NSC 96-2627-B-002-003-, 95-3114-P-002-005-Y, 95-2221-E-002-274-MY2, 96-2320-B-006-027-MY2 and 96-2221-E-006-2
  21. Darby Tien-Hao Chang, Yu-Yen Ou, Hao-Geng Hung, Meng-Han Yang, Chien-Yu Chen and Yen-Jen Oyang*, “Prediction of protein secondary structures with a novel kernel density estimation based classifier,” BMC Research Notes, 1:51, 2008. (NSC 96-2320-B-006-027-MY2 and 96-2221-E-006-232-MY2)
  22. Darby Tien-Hao Chang, Yi-Zhong Weng, Jung-Hsin Lin, Ming-Jing Hwang, and Yen-Jen Oyang*, “Protemot: prediction of protein binding sites with automatically extracted geometrical templates,” Nucleic Acids Research, 34, Web Server Issue, W303-W309, 2006. (SCI 8.278, 27/290=9.3% in BIOCHEMISTRY & MOLECULAR BIOLOGY) (NSC 94-2627-B-002-007) Protemot is available at http://protemot.ee.ncku.edu.tw/,http://protemot.csie.ntu.edu.tw/, and http://protemot.csbb.ncku.edu.tw/.
  23. Darby Tien-Hau Chang, Yen-Jen Oyang, and Jung-Hsin Lin*, “MEDock: a Web Server for Efficient Prediction of Ligand Binding Sites Based on a Novel Optimization Algorithm,” Nucleic Acids Research, 33, Web Server Issue, W233-W238, 2005. (SCI 8.278, 27/290=9.3% in BIOCHEMISTRY & MOLECULAR BIOLOGY) (NSC 92-2213-E-002-095) MEDock is available at http://medock.ee.ncku.edu.tw/,http://medock.csie.ntu.edu.tw/, and http://medock.csbb.ntu.edu.tw/.
  24. Darby Tien-Hau Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang*, Hsueh-Fen Juan, and Hsuan-Cheng Huang, “ProteMiner-SSM: A Web Server for Identifying Possible Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures,” Nucleic Acids Research, 32, Web Server Issue, W76-W82, 2004. (SCI 8.278, 27/290=9.3% in BIOCHEMISTRY & MOLECULAR BIOLOGY) (NSC 92-2323-B-002-013 and NSC 92-2213-Ehttp://proteminer.csie.ntu.edu.tw/, and http://proteminer.csbb.ntu.edu.tw/.
Conference
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  1. Li-Fan Hsieh, Hung-Jiun Lin, Yueh-kao Wu and Darby Tien-Hao Chang, "Handwritten Digit Editing with Conditional GAN," in International Conference on Image and Graphics Processing, Singapore, February 8-10, 2020.(ICIGP 2020)
  2. Yen-Lin Huang and Darby Tien-Hao Chang, "A crowdsourcing mobile game used for biomedical named-entity recognition," in Asia-Pacific International Congress on Engineering & Natural Sciences, Okinawa, Japan, August 2-4, 2016. (APICENS 2016)
  3. Darby Tien-Hao Chang, "Studying conformational changes on GDP and GTP binding with a novel visualization platform," in International Conference and Exhibition on Metabolomics, Osaka, Japan, May 16-18, 2016.
  4. Wei-Chih Wang, Darby Tien-Hao Chang, Chileung Tsui and Benjamin Estroff, " Platform-based shear force sensor," in International Symposium of Optomechatronics Technology, Neuchatel, Switzerland, October 14-16, 2015(ISOT 2015)
  5. Che-Wei Chang, Wen-Bin Lee, An Chen-Deng, Tsunglin Li, Joseph T. Tseng and Darby Tien-Hao Chang, " Light-RCV: a lightweight read coverage viewer for next generation sequencing data," in International Conference on Genome Informatics, Tokyo, Japan, November 9-11, 2015(GIW/InCoB 2015)
  6. Chia-Pin Kang, Hung-Chi Tu, Tzu-Fun Fu and Darby Tien-Hao Chang, " An Automatic Method to Calculate Heartbeat from Zebrafish Embryo Videos," in International Conference on Genome Informatics, Tokyo, Japan, November 9-11, 2015(GIW/InCoB 2015)
  7. Shao-Ting Jang and Darby Tien-Hao Chang, “A systematic analysis on regulatory characteristics of genes with protein-protein interactions,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013. (ISEGB 2013)
  8. Darby Tien-Hao Chang, Wen-Hao Chiang and Chia-Wei Chou, “Identifying structure variation profiles corresponding to biological processes and functions,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013. (ISEGB 2013)
  9. Darby Tien-Hao Chang, Wen-Hao Chiang and Hao Wang, “An enhanced repository of protein structure pairs before and after binding,” in poster proceedings of the 2013 (35th) Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Osaka, Japan, July 3-7, 2013. (EMBC 2013)
  10. Darby Tien-Hao Chang, Yu-Hsiu Hung, Shu-Chun Li, Hsaing-Hung Cheng, Hao Wang, Chia-Wei Chou and Yen-Cheng Tang, “An orange social platform for young people,” in proceedings of the 2013 International Conference on Orange Technologies, Tainan, Taiwan, March 12-16, 2013. (ICOT 2013)
  11. Chen-Yu Fan, Yi-Han Bai, Cheng-Yi Huang, Tsung-Ju Yao and Darby Tien-Hao Chang, “PRASA: an integrated web server that analyzes protein interaction types,” in proceedings of the 23th International Conference on Genome Informatics, Tainan, Taiwan, December 12-14, 2012. (GIW 2012)
  12. Darby Tien-Hao Chang, Wen-Si Li, Yi-Han Bai and Wei-Sheng Wu, “YGA: identifying distinct biological features between yeast gene sets,” in proceedings of the 23th International Conference on Genome Informatics, Tainan, Taiwan, December 12-14, 2012. (GIW 2012)
  13. Jung-Hsien Chiang, Darby Tien-Hao Chang, Hung-Yu Kao, “Introduction to the 23rd International Conference on Genome Informatics (GIW2012),” in proceedings of the 23th International Conference on Genome Informatics, Tainan, Taiwan, December 12-14, 2012. (GIW 2012)
  14. Guan-Yu Shiu and Darby Tien-Hao Chang, “Combining Multiple Cis-regulatory Module Predictors to Improve Prediction Accuracy,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012)
  15. Hao Wang and Darby Tien-Hao Chang, “Molecule society: elucidating the complicated relations among biological molecules from literature and structural information,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012)
  16. Jhih-Jheng Zeng and Darby Tien-Hao Chang, “Integrating an Android App and social network for mining biomedical literature,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012)
  17. Shao-Ting Jang and Darby Tien-Hao Chang, “A systematic analysis on regulatory characteristics of genes with protein-protein interactions,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012)
  18. Tzu-Wen Lin and Darby Tien-Hao Chang, “Predicting Protein-protein Interactions Based on Frequent Short Sequences in Proteome,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012)
  19. You-Jie Sun and Darby Tien-Hao Chang, “Enhancing cis-regulatory model prediction by including interaction information between transcription factors,” in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012)
  20. Chien-Ju Li, Chun-Hui Yu, Chi-Chuan Hwang, Tsunglin Liu and Darby Tien-Hao Chang, “SIMGraph: Simplifying contig graph to improve de novo genome assembly using next-generation sequencing data,” in proceedings of the XXXII International Conference on Bioinformatics, Computational and Systems Biology, Tokyo, Japan,
  21. Darby Tien-Hao Chang, Chih-Yun Chiang, Fung-Wei Lin and Chen-Yu Fan, “Studying Disorder-to-Order Transitions from Structural Analysis,” in proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences, Orlando, Florida, February 3-5, 2011. (ICCABS 2011)
  22. Yi-Zhong Weng, Darby Tien-Hao Chang, Yu-Feng Huang and Chih-Wei Lin, “A study on the flexibility of enzyme active sites,” in proceedings of the 9th Asia Pacific Bioinformatics Conference, Incheon, Korea, January 11-14, 2011. (APBC 2011)
  23. Chen-Hao Hsueh, Darby Tien-Hao Chang and Chih-Yun Chien, “Predicting DNA-binding Proteins using Disorder Information,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010. (InCoB 2010)
  24. Ting-Ying Chien, Chien-Yu Chen, Chih-Kang Lin, Chih-Wei Lin, Cheng-Yi Huang and Darby Tien-Hao Chang, “Prediction of DNA-binding profiles by protein-DNA complexes,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010. (InCoB 2010)
  25. Jian-Wei Wu, Darby Tien-Hao Chang and Chien-Ju Li, “Predicting Protein-protein Interactions using a Hybrid Approach,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010. (InCoB 2010)
  26. Chih-Hung Hsieh, Darby Tien-Hao Chang, Cheng-Hao, Hsueh, Chi-Yeh Wu and Yen-Jen Oyang, “Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm,” in proceedings of the 8th Asia Pacific Bioinformatics Conference, Bangalore, India, January 18-21, 2010. (APBC 2010)
  27. Darby Tien-Hao Chang, Yu-Tang Syu and Po-Chang Lin, “Predicting the protein-protein interactions using primary structures with predicted protein surface,” in proceedings of the 8th Asia Pacific Bioinformatics Conference, Bangalore, India, January 18-21, 2010. (APBC 2010)
  28. Darby Tien-Hao Chang, Jung-Hsin Lin, Chih-Hung Hsieh and Yen-Jen Oyang, “On the Design of Optimization Algorithms for Prediction of Molecular Interactions,” in proceedings of the 9th International Conference on Bioinformatics and BioEngineering, Taichung, Taiwan, June 22-24, 2009. (BIBE 2009)
  29. Chih-Hung Hsieh, Darby Tien-Hao Chang and Yen-Jen Oyang, “Data Classification with a Generalized Gaussian Components based Density Estimation Algorithm,” in poster Proceedings of the 2009 International Joint Conference on Neural Networks, Atlanta, Georgia, June 14-19, 2009. (IJCNN 2009)
  30. Yi-Zhong Weng, Chien-Kang Huang, Yu-Feng Huang, Chi-Yuan Yu and Darby Tien-Hao Chang, “Introducing sequence-order constraint into prediction of protein binding sites with automatically extracted templates,” in proceedings of the 6th International Conference on Bioinformatics and Bioengineering, Tokyo, Japan, May
  31. Darby Tien-Hao Chang, Hsuan-Yu Huang, Yu-Tang Syu and Chih-Peng Wu, “Real value prediction of protein solvent accessibility using enhanced PSSM features,” in proceedings of the 7th International Conference of Bioinformatics, Taipei, Taiwan, October 20-23, 2008. (InCoB 2008)
  32. Darby Tien-Hao Chang, Chih-Ching Wang and Jian-Wei Chen, “Using a kernel density estimation based classifier to predict species-specific microRNA precursors,” in proceedings of the 7th International Conference of Bioinformatics, Taipei, Taiwan, October 20-23, 2008. (InCoB 2008)
  33. Ting-Ying Chien, Darby Tien-Hao Chang and Chien-Yu Chen, “Catalytic Site Prediction Using E1DS Server,” in poster proceedings of the 7th Annual International Conference on Computational Systems Bioinformatics, Stanford, California, August 26-29, 2008. (CSB 2008)
  34. Ting-Ying Chien, arby Tien-Hao Chang, Chien-Yu Chen, Yi-Zhong Weng, and Chen-Ming Hsu, “E1DS: catalytic site prediction based on 1-dimensional signatures of concurrent conservation,” in poster Proceedings of the 16th Annual International Conference Intelligent Systems for Molecular Biology, Toronto, Canada, July
  35. Yen-Jen Oyang, Darby Tien-Hao Chang, Yu-Yen Ou, Hao-Geng Hung, and Chien-Yu Chen, “Prediction of Protein Secondary Structures with a Novel Kernel Density Estimator,” in proceedings of the 2007 International Conference on Machine Learning: Models, Technologies & Applications, Monte Carlo Resort, Las Vegas, Nevada
  36. Ting-Ying Chien, Chien-Yu Chen, Darby Tien-Hao Chang, and Chen-Ming Hsu, “Deriving Functional Signatures from Protein Sequences by Iterative Pattern Mining,” in proceedings of the Eleventh Annual International Conference of Research in Computational Molecular Biology, San Francisco Bay Area, April 21-25, 2007.
  37. Yen-Jen Oyang, Darby Tien-Hau Chang, Yu-Yien Ou, Shien-Ching Hwang, and Chien-Yu Chen, “On the Convergence Rates of the Locally Relaxed Kernel Density Estimator,” in proceedings of the 2006 Hawaii International Conference on Statistics, Mathematics and Related Fields, Honolulu, Hawaii, January 16-18, 2006.
  38. Yen-Jen Oyang, Yu-Yien Ou, Shien-Ching Hwang, Chien-Yu Chen, and Darby Tien-Hau Chang, “The Locally Relaxed Model of Variable Kernel Density Estimation,” in proceedings of the 2006 Hawaii International Conference on Statistics, Mathematics and Related Fields, Honolulu, Hawaii, January 16-18, 2006.
  39. Yen-Jen Oyang, Yu-Yien Ou, Shien-Ching Hwang, Chien-Yu Chen, and Darby Tien-Hau Chang, “Data Classification with a Relaxed Model of Kernel Density Estimation,” in proceedings of the 2005 International Joint Conference on Neural Networks, Montreal, Canada, July 31-August 4, 2005. (IJCNN 2005)
  40. Darby Tien-Hau Chang, Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang, “An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures,” in proceedings of IEEE Fourth Symposium on Bioinformatics and Bioengineering, Taichung, Taiwan, May 19
  41. Yen-Jen Oyang, Darby Tien-Hau Chang, Chien-Yu Chen, and Shien-Ching Hwang, “Expediting Protein Structural Analysis with an Efficient Kernel Density Estimation Algorithm,” in proceedings of IEEE 5th International Symposium on Multimedia Software Engineering, Taichung, Taiwan, December 10-12, 2003. (MSE 2003)
Patent
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Others
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Projects
  1. 開發精實簡易智慧排診系統以提升物理治療服務之成效(2021-2022)
  2. 人工智慧科技介入的藝術創作歷程:科技為工具與科技為媒材的探討(2020-2022)
  3. 信號肽辨識模型及解讀其機制的分析演算法(2019-2021)
  4. 運用複合式機器學習模型分析蛋白質結合形變(2018-2019)
  5. 發展創新之多感官刺激介入工具以提昇中風病患感覺動作能力(2017-2019)
  6. 行動世代的生醫知識萃取方法 (2015-2018)
  7. 分子社群:完整分析生物分子間的複雜關係 (2013–2015)
  8. 利用混合型演算法提升蛋白質交互作用之預測 (2010–2012)
  9. 以自動知識擷取為基礎之計算功能性蛋白質體學—子計畫四: 整合序列、結構與蛋白質交互作用資訊預測蛋白質-DNA結合專一性 (2009–2012)
  10. 利用蛋白質溶劑可接觸性提升蛋白質交互作用之預測 (2009–2010)
  11. 計算生物學先導型研究計畫—子計畫一:系統生物學與生物網路 (2008–2009)
  12. 從基因與結構進行電離子通道的特徵分析 (2007–2009)
  13. 蛋白質結合區域之預測與特性分析 (2007–2009)
  14. 針對高可靠度蛋白質配體嵌合之最佳化演算法特性分析 (2007–2007)
Students
Current Academic Year Lab Members
Ph.D.
王世逢
Master
蘇子竣
邱明叡
葛淯承
葉克理
陳昤欐
林柏宏
王宣雅
廖敏妤
施又琪
張恩祥
Graduates of all Previous Years
Master
96
黃璿宇   王志清
97
林義峰   陳建瑋   鄭智仁   許育堂
98
吳建緯   林柏璋   薛正豪   吳季曄
99
李建儒   黃正一   姜知昀   凌兆恩
100
林方偉   范振宇   白逸翰   姚宗儒
101
林子文   陳冠廷   江文豪   許冠宇   王浩   孫佑杰
102
曾致崢   湯硯程   張紹庭   劉維慶   周家緯
103
黃彥霖   劉佩甄   林靖荃
104
張遠哲   康家彬   張哲惟   曾郁婷   周曠宇
105
朱柏勳   楊璿衞
106
王秉民   鄭宇傑   方沛涵
107
林易瑩   吳哲銘
108
王康霖   張子千   謝姍倪   黃建勛   沈柏妤
109
陳冠宇   林泓鈞   林永泰   羅一中   廖庭暘   謝立凡   蔡岳霖
110
陳智聖   曾士嘉   陳姵蓁   莊淯婷
111
林攸蓁   陳靜誼   黃子芸
Honors